Detailed information of SNP:
|
SNP ID:
sf1126509625(Gbrowse)
Chromosome: chr11 Position: 26509625 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 73.61% | 26.39% |
| All Indica | 798 | 57.77% | 42.23% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 375 | 53.87% | 46.13% |
| Indica II | 213 | 43.66% | 56.34% |
| Indica Intermediate | 210 | 79.05% | 20.95% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126509625 | A->G | INTERGENIC | None |