Detailed information of SNP:
|
SNP ID:
sf1126511118(Gbrowse)
Chromosome: chr11 Position: 26511118 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 73.83% | 26.17% |
| All Indica | 791 | 63.46% | 36.54% |
| All Japonica | 497 | 84.71% | 15.29% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 373 | 50.67% | 49.33% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 206 | 58.25% | 41.75% |
| Temperate Japonica | 335 | 78.21% | 21.79% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126511118 | C->T | INTERGENIC | None |