Detailed information of SNP:
|
SNP ID:
sf1126512821(Gbrowse)
Chromosome: chr11 Position: 26512821 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 73.80% | 26.20% |
| All Indica | 797 | 79.67% | 20.33% |
| All Japonica | 492 | 63.21% | 36.79% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 212 | 45.75% | 54.25% |
| Indica Intermediate | 210 | 81.43% | 18.57% |
| Temperate Japonica | 331 | 58.61% | 41.39% |
| Tropical Japonica | 93 | 68.82% | 31.18% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126512821 | C->T | LOC_Os11g44630(LOC_Os11g44630.1) | INTRON |