Detailed information of SNP:
|
SNP ID:
sf1126519731(Gbrowse)
Chromosome: chr11 Position: 26519731 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 76.14% | 23.86% |
| All Indica | 787 | 88.69% | 11.31% |
| All Japonica | 490 | 57.35% | 42.65% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 369 | 90.51% | 9.49% |
| Indica II | 210 | 93.81% | 6.19% |
| Indica Intermediate | 208 | 80.29% | 19.71% |
| Temperate Japonica | 334 | 51.50% | 48.50% |
| Tropical Japonica | 91 | 68.13% | 31.87% |
| Japonica Intermediate | 65 | 72.31% | 27.69% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126519731 | T->C | LOC_Os11g44640(LOC_Os11g44640.1) | Synonymous |