Detailed information of SNP:
|
SNP ID:
sf1126520716(Gbrowse)
Chromosome: chr11 Position: 26520716 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 94.18% | 5.82% |
| All Indica | 775 | 89.68% | 10.32% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 356 | 83.43% | 16.57% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 208 | 90.87% | 9.13% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126520716 | G->A | INTERGENIC | None |