Detailed information of SNP:
|
SNP ID:
sf1126528541(Gbrowse)
Chromosome: chr11 Position: 26528541 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 92.44% | 7.56% |
| All Indica | 796 | 93.84% | 6.16% |
| All Japonica | 496 | 92.74% | 7.26% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 373 | 94.64% | 5.36% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 334 | 94.01% | 5.99% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126528541 | C->T | LOC_Os11g44650(LOC_Os11g44650.1) | Synonymous |