Detailed information of SNP:
|
SNP ID:
sf1126548452(Gbrowse)
Chromosome: chr11 Position: 26548452 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 64.36% | 35.64% |
| All Indica | 797 | 67.00% | 33.00% |
| All Japonica | 496 | 60.69% | 39.31% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 373 | 81.77% | 18.23% |
| Indica II | 213 | 33.80% | 66.20% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 335 | 53.43% | 46.57% |
| Tropical Japonica | 93 | 70.97% | 29.03% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126548452 | A->G | LOC_Os11g44680(LOC_Os11g44680.1) | INTRON |