Detailed information of SNP:
|
SNP ID:
sf1126556808(Gbrowse)
Chromosome: chr11 Position: 26556808 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 94.30% | 5.70% |
| All Indica | 786 | 92.62% | 7.38% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 370 | 97.30% | 2.70% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 205 | 77.56% | 22.44% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126556808 | T->C | INTERGENIC | None |