Detailed information of SNP:
|
SNP ID:
sf1126557513(Gbrowse)
Chromosome: chr11 Position: 26557513 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 76.13% | 23.87% |
| All Indica | 783 | 62.07% | 37.93% |
| All Japonica | 495 | 93.54% | 6.46% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 371 | 59.30% | 40.70% |
| Indica II | 213 | 49.77% | 50.23% |
| Indica Intermediate | 199 | 80.40% | 19.60% |
| Temperate Japonica | 333 | 92.49% | 7.51% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126557513 | G->A | INTERGENIC | None |