Detailed information of SNP:
|
SNP ID:
sf1126560142(Gbrowse)
Chromosome: chr11 Position: 26560142 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 78.59% | 21.41% |
| All Indica | 797 | 72.77% | 27.23% |
| All Japonica | 497 | 86.92% | 13.08% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 375 | 88.80% | 11.20% |
| Indica II | 211 | 42.18% | 57.82% |
| Indica Intermediate | 211 | 74.88% | 25.12% |
| Temperate Japonica | 335 | 81.79% | 18.21% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126560142 | C->A | LOC_Os11g44700(LOC_Os11g44700.1) | Non-Synonymous SNP |