Detailed information of SNP:
|
SNP ID:
sf1126605434(Gbrowse)
Chromosome: chr11 Position: 26605434 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 98.37% | 1.63% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 491 | 96.74% | 3.26% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 90 | 92.22% | 7.78% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126605434 | C->T | INTERGENIC | None |