Detailed information of SNP:
|
SNP ID:
sf1126606280(Gbrowse)
Chromosome: chr11 Position: 26606280 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1397 | 76.66% | 23.34% |
| All Indica | 783 | 70.63% | 29.37% |
| All Japonica | 494 | 89.68% | 10.32% |
| Aus | 66 | 69.70% | 30.30% |
| Indica I | 365 | 89.59% | 10.41% |
| Indica II | 208 | 37.50% | 62.50% |
| Indica Intermediate | 210 | 70.48% | 29.52% |
| Temperate Japonica | 333 | 95.80% | 4.20% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126606280 | A->G | INTERGENIC | None |