Detailed information of SNP:
|
SNP ID:
sf1126628410(Gbrowse)
Chromosome: chr11 Position: 26628410 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1358 | 52.87% | 47.13% |
| All Indica | 765 | 27.19% | 72.81% |
| All Japonica | 476 | 90.13% | 9.87% |
| Aus | 63 | 66.67% | 33.33% |
| Indica I | 367 | 27.52% | 72.48% |
| Indica II | 210 | 26.67% | 73.33% |
| Indica Intermediate | 188 | 27.13% | 72.87% |
| Temperate Japonica | 318 | 88.68% | 11.32% |
| Tropical Japonica | 91 | 94.51% | 5.49% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126628410 | A->G | INTERGENIC | None |