Detailed information of SNP:
|
SNP ID:
sf1126641527(Gbrowse)
Chromosome: chr11 Position: 26641527 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 76.06% | 23.94% |
| All Indica | 798 | 78.07% | 21.93% |
| All Japonica | 496 | 69.96% | 30.04% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 212 | 40.09% | 59.91% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 335 | 59.40% | 40.60% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126641527 | C->T | LOC_Os11g44800(LOC_Os11g44800.1) | UTR_3_PRIME |