Detailed information of SNP:
|
SNP ID:
sf1126650283(Gbrowse)
Chromosome: chr11 Position: 26650283 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 97.62% | 2.38% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 467 | 94.65% | 5.35% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 314 | 95.22% | 4.78% |
| Tropical Japonica | 91 | 91.21% | 8.79% |
| Japonica Intermediate | 62 | 96.77% | 3.23% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126650283 | A->T | INTERGENIC | None |