Detailed information of SNP:
|
SNP ID:
sf1126693046(Gbrowse)
Chromosome: chr11 Position: 26693046 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 71.35% | 28.65% |
| All Indica | 797 | 81.43% | 18.57% |
| All Japonica | 497 | 63.18% | 36.82% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 374 | 77.54% | 22.46% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 77.14% | 22.86% |
| Temperate Japonica | 335 | 73.13% | 26.87% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126693046 | G->A | LOC_Os11g44880(LOC_Os11g44880.1) | INTRON |