Detailed information of SNP:
|
SNP ID:
sf1126704667(Gbrowse)
Chromosome: chr11 Position: 26704667 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 84.43% | 15.57% |
| All Indica | 799 | 82.23% | 17.77% |
| All Japonica | 497 | 89.74% | 10.26% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 77.07% | 22.93% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 88.06% | 11.94% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126704667 | C->T | LOC_Os11g44900(LOC_Os11g44900.1) | SNPs that introduce stop codons |