Detailed information of SNP:
|
SNP ID:
sf1126713877(Gbrowse)
Chromosome: chr11 Position: 26713877 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 75.27% | 24.73% |
| All Indica | 795 | 67.55% | 32.45% |
| All Japonica | 488 | 87.09% | 12.91% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 375 | 44.00% | 56.00% |
| Indica II | 211 | 91.94% | 8.06% |
| Indica Intermediate | 209 | 85.17% | 14.83% |
| Temperate Japonica | 326 | 88.96% | 11.04% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126713877 | G->A | INTERGENIC | None |