Detailed information of SNP:
|
SNP ID:
sf1126714997(Gbrowse)
Chromosome: chr11 Position: 26714997 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 90.77% | 9.23% |
| All Indica | 799 | 89.74% | 10.26% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 92.54% | 7.46% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126714997 | C->T | INTERGENIC | None |