Detailed information of SNP:
|
SNP ID:
sf1126715825(Gbrowse)
Chromosome: chr11 Position: 26715825 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 95.56% | 4.44% |
| All Indica | 796 | 97.11% | 2.89% |
| All Japonica | 486 | 93.62% | 6.38% |
| Aus | 58 | 87.93% | 12.07% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 324 | 91.67% | 8.33% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126715825 | C->T | INTERGENIC | None |