Detailed information of SNP:
|
SNP ID:
sf1126726522(Gbrowse)
Chromosome: chr11 Position: 26726522 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 70.10% | 29.90% |
| All Indica | 798 | 53.51% | 46.49% |
| All Japonica | 497 | 93.96% | 6.04% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 47.47% | 52.53% |
| Indica II | 212 | 41.98% | 58.02% |
| Indica Intermediate | 211 | 75.83% | 24.17% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126726522 | C->T | INTERGENIC | None |