Detailed information of SNP:
|
SNP ID:
sf1126752577(Gbrowse)
Chromosome: chr11 Position: 26752577 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1384 | 95.09% | 4.91% |
| All Indica | 769 | 94.54% | 5.46% |
| All Japonica | 493 | 96.55% | 3.45% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 363 | 95.32% | 4.68% |
| Indica II | 210 | 99.52% | 0.48% |
| Indica Intermediate | 196 | 87.76% | 12.24% |
| Temperate Japonica | 333 | 97.00% | 3.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 66 | 93.94% | 6.06% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126752577 | G->C | LOC_Os11g44960(LOC_Os11g44960.1) | Non-Synonymous SNP |