Detailed information of SNP:
|
SNP ID:
sf1126755555(Gbrowse)
Chromosome: chr11 Position: 26755555 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 92.60% | 7.40% |
| All Indica | 792 | 91.04% | 8.96% |
| All Japonica | 491 | 96.95% | 3.05% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 371 | 92.72% | 7.28% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 209 | 84.69% | 15.31% |
| Temperate Japonica | 329 | 96.96% | 3.04% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126755555 | T->C | INTERGENIC | None |