Detailed information of SNP:
|
SNP ID:
sf1126786757(Gbrowse)
Chromosome: chr11 Position: 26786757 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 96.23% | 3.77% |
| All Indica | 786 | 93.64% | 6.36% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 202 | 80.69% | 19.31% |
| Indica Intermediate | 209 | 95.22% | 4.78% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126786757 | C->T | INTERGENIC | None |