Detailed information of SNP:
|
SNP ID:
sf1126809438(Gbrowse)
Chromosome: chr11 Position: 26809438 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1343 | 77.22% | 22.78% |
| All Indica | 743 | 82.10% | 17.90% |
| All Japonica | 486 | 66.46% | 33.54% |
| Aus | 61 | 90.16% | 9.84% |
| Indica I | 356 | 91.57% | 8.43% |
| Indica II | 195 | 69.74% | 30.26% |
| Indica Intermediate | 192 | 77.08% | 22.92% |
| Temperate Japonica | 327 | 52.29% | 47.71% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126809438 | A->G | LOC_Os11g45080(LOC_Os11g45080.1) | INTRON |