Detailed information of SNP:
|
SNP ID:
sf1126817696(Gbrowse)
Chromosome: chr11 Position: 26817696 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1389 | 84.16% | 15.84% |
| All Indica | 783 | 77.91% | 22.09% |
| All Japonica | 485 | 92.37% | 7.63% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 78.13% | 21.87% |
| Indica II | 202 | 72.77% | 27.23% |
| Indica Intermediate | 206 | 82.52% | 17.48% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 88 | 88.64% | 11.36% |
| Japonica Intermediate | 63 | 68.25% | 31.75% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126817696 | C->T | INTERGENIC | None |