Detailed information of SNP:
|
SNP ID:
sf1126818023(Gbrowse)
Chromosome: chr11 Position: 26818023 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1356 | 50.74% | 49.26% |
| All Indica | 764 | 56.81% | 43.19% |
| All Japonica | 481 | 38.46% | 61.54% |
| Aus | 60 | 50.00% | 50.00% |
| Indica I | 363 | 55.37% | 44.63% |
| Indica II | 203 | 60.59% | 39.41% |
| Indica Intermediate | 198 | 55.56% | 44.44% |
| Temperate Japonica | 326 | 23.01% | 76.99% |
| Tropical Japonica | 88 | 79.55% | 20.45% |
| Japonica Intermediate | 67 | 59.70% | 40.30% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 67.57% | 32.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126818023 | C->G | INTERGENIC | None |