Detailed information of SNP:
|
SNP ID:
sf1126885735(Gbrowse)
Chromosome: chr11 Position: 26885735 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 77.43% | 22.57% |
| All Indica | 799 | 67.71% | 32.29% |
| All Japonica | 497 | 92.35% | 7.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 87.73% | 12.27% |
| Indica II | 213 | 27.70% | 72.30% |
| Indica Intermediate | 211 | 72.51% | 27.49% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126885735 | A->T | LOC_Os11g45200(LOC_Os11g45200.1) | INTRON |