Detailed information of SNP:
|
SNP ID:
sf1126887270(Gbrowse)
Chromosome: chr11 Position: 26887270 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 82.45% | 17.55% |
| All Indica | 799 | 74.72% | 25.28% |
| All Japonica | 497 | 92.15% | 7.85% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 31.92% | 68.08% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126887270 | G->A | LOC_Os11g45200(LOC_Os11g45200.1) | Synonymous |