Detailed information of SNP:
|
SNP ID:
sf1126890607(Gbrowse)
Chromosome: chr11 Position: 26890607 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1361 | 90.82% | 9.18% |
| All Indica | 795 | 98.62% | 1.38% |
| All Japonica | 456 | 78.51% | 21.49% |
| Aus | 56 | 85.71% | 14.29% |
| Indica I | 371 | 98.65% | 1.35% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 305 | 78.36% | 21.64% |
| Tropical Japonica | 86 | 73.26% | 26.74% |
| Japonica Intermediate | 65 | 86.15% | 13.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126890607 | G->T | LOC_Os11g45210(LOC_Os11g45210.1) | Synonymous |