Detailed information of SNP:
|
SNP ID:
sf1126891981(Gbrowse)
Chromosome: chr11 Position: 26891981 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 51.17% | 48.83% |
| All Indica | 799 | 42.80% | 57.20% |
| All Japonica | 493 | 57.40% | 42.60% |
| Aus | 65 | 76.92% | 23.08% |
| Indica I | 375 | 52.27% | 47.73% |
| Indica II | 213 | 26.29% | 73.71% |
| Indica Intermediate | 211 | 42.65% | 57.35% |
| Temperate Japonica | 332 | 42.77% | 57.23% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126891981 | T->C | INTERGENIC | None |