Detailed information of SNP:
|
SNP ID:
sf1126892989(Gbrowse)
Chromosome: chr11 Position: 26892989 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 83.63% | 16.37% |
| All Indica | 799 | 77.47% | 22.53% |
| All Japonica | 495 | 94.34% | 5.66% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 74.93% | 25.07% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 211 | 76.30% | 23.70% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126892989 | G->A | INTERGENIC | None |