Detailed information of SNP:
|
SNP ID:
sf1126900397(Gbrowse)
Chromosome: chr11 Position: 26900397 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1339 | 96.71% | 3.29% |
| All Indica | 737 | 94.44% | 5.56% |
| All Japonica | 492 | 100.00% | 0.00% |
| Aus | 57 | 98.25% | 1.75% |
| Indica I | 355 | 96.62% | 3.38% |
| Indica II | 193 | 89.64% | 10.36% |
| Indica Intermediate | 189 | 95.24% | 4.76% |
| Temperate Japonica | 330 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126900397 | C->T | LOC_Os11g45230(LOC_Os11g45230.1) | Synonymous |