Detailed information of SNP:
|
SNP ID:
sf1126900400(Gbrowse)
Chromosome: chr11 Position: 26900400 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1325 | 96.15% | 3.85% |
| All Indica | 723 | 93.36% | 6.64% |
| All Japonica | 492 | 100.00% | 0.00% |
| Aus | 57 | 98.25% | 1.75% |
| Indica I | 354 | 95.76% | 4.24% |
| Indica II | 189 | 88.89% | 11.11% |
| Indica Intermediate | 180 | 93.33% | 6.67% |
| Temperate Japonica | 330 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126900400 | T->C | LOC_Os11g45230(LOC_Os11g45230.1) | Synonymous |