Detailed information of SNP:
|
SNP ID:
sf1126911790(Gbrowse)
Chromosome: chr11 Position: 26911790 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 56.77% | 43.23% |
| All Indica | 781 | 62.74% | 37.26% |
| All Japonica | 486 | 46.71% | 53.29% |
| Aus | 65 | 43.08% | 56.92% |
| Indica I | 367 | 44.96% | 55.04% |
| Indica II | 210 | 97.62% | 2.38% |
| Indica Intermediate | 204 | 58.82% | 41.18% |
| Temperate Japonica | 333 | 46.55% | 53.45% |
| Tropical Japonica | 92 | 42.39% | 57.61% |
| Japonica Intermediate | 61 | 54.10% | 45.90% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126911790 | G->A | INTERGENIC | None |