Detailed information of SNP:
|
SNP ID:
sf1126912547(Gbrowse)
Chromosome: chr11 Position: 26912547 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 91.61% | 8.39% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 497 | 79.07% | 20.93% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 75.22% | 24.78% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126912547 | T->C | LOC_Os11g45250(LOC_Os11g45250.2) | Synonymous |
| sf1126912547 | T->C | LOC_Os11g45250(LOC_Os11g45250.1) | Synonymous |