Detailed information of SNP:
|
SNP ID:
sf1126917042(Gbrowse)
Chromosome: chr11 Position: 26917042 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1401 | 61.31% | 38.69% |
| All Indica | 787 | 48.67% | 51.33% |
| All Japonica | 495 | 81.41% | 18.59% |
| Aus | 64 | 71.88% | 28.12% |
| Indica I | 375 | 62.40% | 37.60% |
| Indica II | 206 | 15.53% | 84.47% |
| Indica Intermediate | 206 | 56.80% | 43.20% |
| Temperate Japonica | 334 | 82.04% | 17.96% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 67 | 68.66% | 31.34% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126917042 | A->G | INTERGENIC | None |