Detailed information of SNP:
|
SNP ID:
sf1126931211(Gbrowse)
Chromosome: chr11 Position: 26931211 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 92.36% | 7.64% |
| All Indica | 795 | 99.12% | 0.88% |
| All Japonica | 496 | 80.44% | 19.56% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 207 | 96.62% | 3.38% |
| Temperate Japonica | 335 | 76.42% | 23.58% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126931211 | T->C | LOC_Os11g45280(LOC_Os11g45280.2) | INTRON |
| sf1126931211 | T->C | LOC_Os11g45280(LOC_Os11g45280.1) | INTRON |