Detailed information of SNP:
|
SNP ID:
sf1126952128(Gbrowse)
Chromosome: chr11 Position: 26952128 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1381 | 91.60% | 8.40% |
| All Indica | 762 | 85.30% | 14.70% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 362 | 88.12% | 11.88% |
| Indica II | 199 | 77.89% | 22.11% |
| Indica Intermediate | 201 | 87.56% | 12.44% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126952128 | T->C | INTERGENIC | None |