Detailed information of SNP:
|
SNP ID:
sf1126988553(Gbrowse)
Chromosome: chr11 Position: 26988553 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 62.44% | 37.56% |
| All Indica | 799 | 54.32% | 45.68% |
| All Japonica | 497 | 70.22% | 29.78% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 71.47% | 28.53% |
| Indica II | 213 | 21.60% | 78.40% |
| Indica Intermediate | 211 | 56.87% | 43.13% |
| Temperate Japonica | 335 | 61.79% | 38.21% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126988553 | G->A | INTERGENIC | None |