Detailed information of SNP:
|
SNP ID:
sf1126990336(Gbrowse)
Chromosome: chr11 Position: 26990336 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 81.96% | 18.04% |
| All Indica | 792 | 77.27% | 22.73% |
| All Japonica | 485 | 93.81% | 6.19% |
| Aus | 66 | 66.67% | 33.33% |
| Indica I | 374 | 71.12% | 28.88% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 206 | 71.84% | 28.16% |
| Temperate Japonica | 325 | 97.23% | 2.77% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 66 | 89.39% | 10.61% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126990336 | G->A | INTERGENIC | None |