Detailed information of SNP:
|
SNP ID:
sf1127001132(Gbrowse)
Chromosome: chr11 Position: 27001132 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 98.58% | 1.42% |
| All Indica | 792 | 99.62% | 0.38% |
| All Japonica | 492 | 96.95% | 3.05% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 205 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 91 | 94.51% | 5.49% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127001132 | G->A | LOC_Os11g45390(LOC_Os11g45390.1) | INTRON |