Detailed information of SNP:
|
SNP ID:
sf1127008737(Gbrowse)
Chromosome: chr11 Position: 27008737 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 84.48% | 15.52% |
| All Indica | 797 | 78.92% | 21.08% |
| All Japonica | 493 | 92.29% | 7.71% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 375 | 64.53% | 35.47% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 209 | 86.60% | 13.40% |
| Temperate Japonica | 333 | 92.19% | 7.81% |
| Tropical Japonica | 92 | 89.13% | 10.87% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127008737 | C->T | INTERGENIC | None |