Detailed information of SNP:
|
SNP ID:
sf1127017249(Gbrowse)
Chromosome: chr11 Position: 27017249 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 62.81% | 37.19% |
| All Indica | 797 | 47.93% | 52.07% |
| All Japonica | 497 | 83.30% | 16.70% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 50.13% | 49.87% |
| Indica II | 213 | 27.70% | 72.30% |
| Indica Intermediate | 211 | 64.45% | 35.55% |
| Temperate Japonica | 335 | 87.16% | 12.84% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127017249 | G->C | LOC_Os11g45400(LOC_Os11g45400.1) | INTRON |