Detailed information of SNP:
|
SNP ID:
sf1127022448(Gbrowse)
Chromosome: chr11 Position: 27022448 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 76.74% | 23.26% |
| All Indica | 799 | 80.60% | 19.40% |
| All Japonica | 497 | 68.61% | 31.39% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 74.40% | 25.60% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 66.27% | 33.73% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127022448 | C->G | LOC_Os11g45410(LOC_Os11g45410.1) | INTRON |