Detailed information of SNP:
|
SNP ID:
sf1127026323(Gbrowse)
Chromosome: chr11 Position: 27026323 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1383 | 54.52% | 45.48% |
| All Indica | 766 | 42.82% | 57.18% |
| All Japonica | 497 | 70.02% | 29.98% |
| Aus | 64 | 82.81% | 17.19% |
| Indica I | 356 | 44.94% | 55.06% |
| Indica II | 213 | 26.76% | 73.24% |
| Indica Intermediate | 197 | 56.35% | 43.65% |
| Temperate Japonica | 335 | 76.42% | 23.58% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127026323 | G->C | INTERGENIC | None |