Detailed information of SNP:
|
SNP ID:
sf1127044719(Gbrowse)
Chromosome: chr11 Position: 27044719 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 78.50% | 21.50% |
| All Indica | 782 | 91.94% | 8.06% |
| All Japonica | 485 | 54.64% | 45.36% |
| Aus | 64 | 90.62% | 9.38% |
| Indica I | 366 | 90.98% | 9.02% |
| Indica II | 207 | 93.24% | 6.76% |
| Indica Intermediate | 209 | 92.34% | 7.66% |
| Temperate Japonica | 327 | 50.46% | 49.54% |
| Tropical Japonica | 93 | 64.52% | 35.48% |
| Japonica Intermediate | 65 | 61.54% | 38.46% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127044719 | T->C | INTERGENIC | None |