Detailed information of SNP:
|
SNP ID:
sf1127057583(Gbrowse)
Chromosome: chr11 Position: 27057583 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 96.66% | 3.34% |
| All Indica | 797 | 97.11% | 2.89% |
| All Japonica | 488 | 96.93% | 3.07% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 374 | 95.99% | 4.01% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 332 | 97.89% | 2.11% |
| Tropical Japonica | 90 | 94.44% | 5.56% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127057583 | C->T | INTERGENIC | None |