Detailed information of SNP:
|
SNP ID:
sf1127083619(Gbrowse)
Chromosome: chr11 Position: 27083619 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1388 | 67.07% | 32.93% |
| All Indica | 788 | 81.60% | 18.40% |
| All Japonica | 478 | 44.35% | 55.65% |
| Aus | 66 | 45.45% | 54.55% |
| Indica I | 372 | 84.95% | 15.05% |
| Indica II | 211 | 91.94% | 8.06% |
| Indica Intermediate | 205 | 64.88% | 35.12% |
| Temperate Japonica | 318 | 43.40% | 56.60% |
| Tropical Japonica | 93 | 37.63% | 62.37% |
| Japonica Intermediate | 67 | 58.21% | 41.79% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127083619 | C->T | LOC_Os11g45510(LOC_Os11g45510.1) | Synonymous |