Detailed information of SNP:
|
SNP ID:
sf1127091675(Gbrowse)
Chromosome: chr11 Position: 27091675 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1318 | 64.87% | 35.13% |
| All Indica | 749 | 53.14% | 46.86% |
| All Japonica | 457 | 81.62% | 18.38% |
| Aus | 60 | 78.33% | 21.67% |
| Indica I | 353 | 32.86% | 67.14% |
| Indica II | 207 | 82.13% | 17.87% |
| Indica Intermediate | 189 | 59.26% | 40.74% |
| Temperate Japonica | 316 | 83.23% | 16.77% |
| Tropical Japonica | 82 | 79.27% | 20.73% |
| Japonica Intermediate | 59 | 76.27% | 23.73% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 60.53% | 39.47% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127091675 | C->G | LOC_Os11g45530(LOC_Os11g45530.1) | SNPs that disrupt stop codons |